The complex structure of Omicron BA.4 RBD with BD604, S309, and S304
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8hws
Q-score: 0.472
He Q, Wu L, Xu Z, Wang X, Xie Y, Chai Y, Zheng A, Zhou J, Qiao S, Huang M, Shang G, Zhao X, Feng Y, Qi J, Gao GF, Wang Q
Cell Rep Med (2023) 4 pp. 100991-100991 [ DOI: doi:10.1016/j.xcrm.2023.100991 Pubmed: 37019110 ]
- Bd-604 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Bd-604 fab light chain (23 kDa, Protein from Homo sapiens)
- Omicron ba.4/5 rbd in complex with fabs of bd-604, s304 and s309 (Complex from Homo sapiens)
- S309 fab heavy chain (25 kDa, Protein from Homo sapiens)
- S304 fab heavy chain (24 kDa, Protein from Homo sapiens)
- S309 fab light chain (23 kDa, Protein from Homo sapiens)
- Spike protein s2' (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S304 fab light chain (23 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron BA.2 RBD complexed with BD-604 and S304 Fab
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8hwt
Q-score: 0.448
He Q, Wu L, Xu Z, Wang X, Xie Y, Chai Y, Zheng A, Zhou J, Qiao S, Huang M, Shang G, Zhao X, Feng Y, Qi J, Gao GF, Wang Q
Cell Rep Med (2023) 4 pp. 100991-100991 [ DOI: doi:10.1016/j.xcrm.2023.100991 Pubmed: 37019110 ]
- Sars-cov-2 omicron ba.2 rbd complexed with bd-604 and s304 fab (Complex from Homo sapiens)
- Spike protein s2' (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bd-604 heavy chain (24 kDa, Protein from Homo sapiens)
- Bd-604 light chain (23 kDa, Protein from Homo sapiens)
- S304 light chain (23 kDa, Protein from Homo sapiens)
- S304 heavy chain (24 kDa, Protein from Homo sapiens)
Structure of dengue virus (DENV2) in complex with prM12, an anti-PrM monoclonal antibody
Resolution: 10.2 Å
EM Method: Single-particle
Fitted PDBs: 8fe3
Q-score: 0.059
A Dowd K, Sirohi D, D Speer S, VanBlargan LA, Chen RE, Mukherjee S, Whitener BM, Govero J, Aleshnick M, Larman B, Sukupolvi-Petty S, Sevvana M, Miller AS, Klose T, Zheng A, Koenig S, Kielian M, Kuhn RJ, Diamond MS, Pierson TC
PNAS (2023) 120 pp. e2218899120-e2218899120 [ Pubmed: 36638211 DOI: doi:10.1073/pnas.2218899120 ]
- Envelope protein e (43 kDa, Protein from Dengue virus type 2)
- Prm protein (9 kDa, Protein from Dengue virus type 2)
- Prm12 fab light chain (23 kDa, Protein from Mus musculus)
- Dengue virus 2 (Virus from Dengue virus 2)
- Prm12 fab heavy chain (24 kDa, Protein from Mus musculus)
Structure of dengue virus (DENV2) in complex with prM13, an anti-PrM monoclonal antibody
Resolution: 9.8 Å
EM Method: Single-particle
Fitted PDBs: 8fe4
Q-score: 0.062
A Dowd K, Sirohi D, D Speer S, VanBlargan LA, Chen RE, Mukherjee S, Whitener BM, Govero J, Aleshnick M, Larman B, Sukupolvi-Petty S, Sevvana M, Miller AS, Klose T, Zheng A, Koenig S, Kielian M, Kuhn RJ, Diamond MS, Pierson TC
PNAS (2023) 120 pp. e2218899120-e2218899120 [ Pubmed: 36638211 DOI: doi:10.1073/pnas.2218899120 ]
- Envelope protein e (43 kDa, Protein from Dengue virus type 2)
- Prm protein (9 kDa, Protein from Dengue virus type 2)
- Prm13 fab light chain (23 kDa, Protein from Mus musculus)
- Dengue virus 2 (Virus from Dengue virus 2)
- Prm13 fab heavy chain (23 kDa, Protein from Mus musculus)
Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 7wrh
Q-score: 0.468
Li L, Han P, Huang B, Xie Y, Li W, Zhang D, Han P, Xu Z, Bai B, Zhou J, Kang X, Li X, Zheng A, Zhang R, Qiao S, Zhao X, Qi J, Wang Q, Liu K, Gao GF
Cell Discov (2022) 8 pp. 65-65 [ DOI: doi:10.1038/s41421-022-00431-0 Pubmed: 35821014 ]
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Complex of sars-cov-2 omicron ba.1 spike protein with mouse ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Processed angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mouse ace2 (Complex)
Cryo-EM structure of SARS-CoV spike receptor-binding domain in complex with sea lion ACE2
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7wsg
Q-score: 0.464
Li S, Yang R, Zhang D, Han P, Xu Z, Chen Q, Zhao R, Zhao X, Qu X, Zheng A, Wang L, Li L, Hu Y, Zhang R, Su C, Niu S, Zhang Y, Qi J, Liu K, Wang Q, Gao GF
Natl Sci Rev (2022) 9 pp. nwac122-nwac122 [ Pubmed: 36187898 DOI: doi:10.1093/nsr/nwac122 ]
- Sea lion ace2 (Complex)
- Sars-cov spike receptor-binding domain in complex with sea lion ace2 (Complex from Mammalia)
- Zinc ion (65 Da, Ligand)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Angiotensin-converting enzyme (93 kDa, Protein from Mammalia)
- Sars-cov spike receptor-binding domain (Complex from Severe acute respiratory syndrome coronavirus)
Cryo-EM structure of SARS-CoV-2 spike receptor-binding domain in complex with sea lion ACE2
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7wsh
Q-score: 0.559
Li S, Yang R, Zhang D, Han P, Xu Z, Chen Q, Zhao R, Zhao X, Qu X, Zheng A, Wang L, Li L, Hu Y, Zhang R, Su C, Niu S, Zhang Y, Qi J, Liu K, Wang Q, Gao GF
Natl Sci Rev (2022) 9 pp. nwac122-nwac122 [ Pubmed: 36187898 DOI: doi:10.1093/nsr/nwac122 ]
- Sea lion ace2 (Complex)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike receptor-binding domain in complex with sea lion ace2 (Complex from Mammalia)
- Zinc ion (65 Da, Ligand)
- Sars-cov-2 spike receptor-binding domain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme (93 kDa, Protein from Mammalia)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7wse
Q-score: 0.504
Li S, Yang R, Zhang D, Han P, Xu Z, Chen Q, Zhao R, Zhao X, Qu X, Zheng A, Wang L, Li L, Hu Y, Zhang R, Su C, Niu S, Zhang Y, Qi J, Liu K, Wang Q, Gao GF
Natl Sci Rev (2022) 9 pp. nwac122-nwac122 [ Pubmed: 36187898 DOI: doi:10.1093/nsr/nwac122 ]
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Minke whale ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme (85 kDa, Protein from Mammalia)
- Sars-cov-2 spike receptor-binding domain complexed with its receptor minke whale ace2 (Complex from Mammalia)
- Sars-cov-2 spike receptor-binding domain (Complex)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of SARS-CoV spike receptor-binding domain in complex with minke whale ACE2
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 7wsf
Q-score: 0.544
Li S, Yang R, Zhang D, Han P, Xu Z, Chen Q, Zhao R, Zhao X, Qu X, Zheng A, Wang L, Li L, Hu Y, Zhang R, Su C, Niu S, Zhang Y, Qi J, Liu K, Wang Q, Gao GF
Natl Sci Rev (2022) 9 pp. nwac122-nwac122 [ Pubmed: 36187898 DOI: doi:10.1093/nsr/nwac122 ]
- Angiotensin-converting enzyme (85 kDa, Protein from Mammalia)
- Sars-cov spike receptor-binding domain (Complex)
- Minke whale ace2 (Complex from Severe acute respiratory syndrome coronavirus)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Zinc ion (65 Da, Ligand)
- Sars-cov spike receptor-binding domain in complex with minke whale ace2 (Complex from Mammalia)
Local CryoEM structure of the SARS-CoV-2 S6P(B.1.1.529) in complex with BD55-4637 Fab
Resolution: 4.08 Å
EM Method: Single-particle
Fitted PDBs: 7wrj
Q-score: 0.322
Cao Y, Jian F, Zhang Z, Yisimayi A, Hao X, Bao L, Yuan F, Yu Y, Du S, Wang J, Xiao T, Song W, Zhang Y, Liu P, An R, Wang P, Wang Y, Yang S, Niu X, Zhang Y, Gu Q, Shao F, Hu Y, Yin W, Zheng A, Wang Y, Qin C, Jin R, Xiao J, Xie XS
Cell Rep (2022) 41 pp. 111845-111845 [ DOI: doi:10.1016/j.celrep.2022.111845 Pubmed: 36493787 ]
- Bd55-4637h (27 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bd55-4637l (24 kDa, Protein from Homo sapiens)
- The sars-cov-2 s6p(b.1.1.529) in complex with bd55-4637 fab (Complex from Homo sapiens)